History of Cytoscape and reason behind its invention
Astonishing features of Cytoscape Java library
The development of plugins in the Cytoscape library makes it more demanding for molecular profiling analyses and bioinformatic data visualization. Hence, the features which make it more popular among web designer for graphical visualization purpose are given below:
Visualization of molecular data
Inputs for molecular interaction networks
Raw interaction files contain the protein-protein and protein–DNA interaction pairs listings, used for input and construction of molecular interaction through Cytoscape. For example, the molecular pairwise data of yeasts and other unicellular organisms are larger and expressed in TRANSFAC databases of the library. Hence, the programming of the library helps the researchers to load and save previous files in form of an XML document. Thus, this document contains the graphs of molecular interactions as well as mRNA expression profiles.
Analysis of genetic profiles and their expressions
Application of Cytoscape Graphical library